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鸟类与病原体的协同演化（co-evolution）：结合野外调查与分子生物学技术，开展中国鸟类血孢子虫多样性及生物地理格局研究，重建鸟类宿主与血孢子虫的协同演化历史，探究环境因素与系统进化过程对宿主-寄生虫关系动态变化的影响。
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鸟类的物种形成模式：利用系统基因组学方法，重建姬鹟属（
Ficedula
）、锦鸡属（
Chrysolophus
）和角雉属（
Tragopan
）中近缘物种的分化历史，探究塑造羽色性二态等表型差异的遗传机制，更深入的理解自然选择和性选择在物种分化中的作用。
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Yang, GC., He, HY., Zhang, GG., Zhao, WY., Zhou, JY., Qian, Y., Huang, X.*, Dong, L*, (2021), Neglected parasite reservoirs in wetlands: Prevalence and diversity of avian haemosporidians in waterbird communities in Northeast China. International Journal for Parasitology: Parasites and Wildlife. 15: 177-183.
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Huang, X., Huang, D., Liang, Y., Zhang, L.,Yang, G., Liu, B., Peng, Y., Deng, W.*, Dong, L.* (2020). A new protocol for absolute quantification of haemosporidian parasites in raptors and comparison with current assays. Parasites & Vectors, 13: 354.
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Wei C, Dong L#, Li SH, Alström P, Liu Y, Xia C, Yao CT, Zhang Y#.（2019）From the Himalayas to a continental Island: Integrative species delimitation in the Brownish-flanked Bush Warbler
Horornis fortipes
complex. Molecular phylogenetics and evolution. 131:219-27.
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Liu B, Deng Z, Huang W, Dong L#, Zhang Y.（2019）High prevalence and narrow host range of haemosporidian parasites in Godlewski's bunting (
Emberiza godlewskii
) in northern China. Parasitology international. 69:121-5.
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Liu Y, Liu S, Yeh C-F, Zhang N, Chen G, Que P, Dong L*, Li S-H*. (2018). The first set of universal nuclear protein-coding loci markers for avian phylogenetic and population genetic studies. Scientific reports. 8:15723.
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Tian H*, Zhou S*, Dong L*, Van Boeckel TP*, Cui Y, Newman SH, Takekawa JY, Prosser DJ, Xiao X, Wu Y.（2015）Avian influenza H5N1 viral and bird migration networks in Asia. PNAS. 112(1):172-7.
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Dong L, Wei M, Alström P, Huang X, Olsson U, Shigeta Y, Zhang Y, Zheng G. Taxonomy of the Narcissus Flycatcher
Ficedula narcissina
complex: an integrative approach using morphological, bioacoustic and multilocus DNA data. Ibis. 2015;157(2):312-25.
